Linkdump for January 23rd through February 3rd
Sorry for the huge linkdump. Postalicious was deactivated after an upgrade to the plugin, and hasn’t been updating for a week or so. The links should be trickling in as usual from now on.
- Animal acoustics: This whale goes to 11 – Best science article title of the week
tags: science oceanography - Graphic image of seal clubbing – via reddit
tags: photo humor system:filetype:jpg system:media:image - Phylogeny of Mixed Drinks – Phylogenetics + Liquor = Awesome
tags: alcohol bioinformatics - Cocktail Party Physics: skeptic etiquette – “But dude! An OLD LADY DIED in that apartment!” she exclaims.
“DUDE! Something like SEVENTY BILLION PEOPLE died since the dawn of humanity. An OLD LADY DIED EVERYWHERE!” I holler.
tags: skepticism science pseudoscience culture - Al Franken takes down Ann Coulter – I know which one I want in the senate!
tags: politics humor video - Take Screenshots in Linux with scrot – Fantastic little tool for taking screenshots
tags: linux ubuntu howto - The CompuTech Group Wordpess 2.7 and PHP4 – Fix to make the quick-posting bookmarklet work again
tags: wordpress tech internet blog - Festival – Text-to-Speech on Ubuntu – Make your linux box read text in that awesomely awful 1980's computer voice
tags: linux ubuntu - Teaching scientific knowledge doesn't improve scientific reasoning – Some experiences in undergrad with pre-meds come to mind…
tags: science education culture academia - Google Visualization API – Google Code –
tags: programming visualization graph api - Don't Become a Scientist! – "I have known more people whose lives have been ruined by getting a Ph.D. in physics than by drugs."
tags: science education - Getting There from Here – Health-care reform and path-dependence
tags: politics economics medicine health - Simple Plug-in Brings Hulu to Your XBMC – Stream Hulu to your TV through your xbox. The quality is pretty darn good, too.
tags: tv media tech - 10 things to be aware of in moving to Ruby 1.9 – Nothing too major, from my perspective
tags: ruby programming tech - Barack Obama vs. Darth Vader – scroll down for the action shot
tags: obama humor
February 4th, 2009 •
1 Comment » •
Tags: quicklinks •

October 5th, 2009 at 3:54 pm
[...] The graph on the left was generated by taking a list of cocktail drinks, representing each ingredient as a different gene, and then using a computer to generate a phylogenetic tree. Over Christmas 2008 I was thinking about how a lot of drink recipes have similar ingredients, and probably developed when someone modified an existing recipe. Take, for example, a Tom Collins and a John Collins, which are identical except that the John Collins uses bourbon instead of gin. I wondered if it was possible to reconstruct the phylogeny of the drinks. It turns out this is easier than one would think. The PHYLIP computer program can create family trees based on presence or absence of a trait (0 or 1), and it doesn’t matter what you consider a “trait”. I collected about 90 recipes and used PHYLIP’s pars utility, with default options, to group them into families based on their 512 unique ingredients. The tree was generated with PHYLIP’s drawgram utility and cleaned up in Inkscape. The tree should technically be unrooted, but I rooted it on vodka since so many of the drinks contain vodka. The cool thing about grouping the drinks this way is that they form families with similar ingredients. So if you like martinis, you can look in the “gin family” to find other drinks that will taste similar. Some of the comments I’ve received: “Phylogenetics + Liquor = Awesome” [...]